Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00937.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3693
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31


Found at i:3656 original size:25 final size:25

Alignment explanation


    Indices: 3627--3677  Score: 84
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       3617 CAAAGGAAAA

                   **                
       3627 TCCTAATCTAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

                                     
       3652 TCCTAATAGAATTCCTAATTTAAAG
          1 TCCTAATAGAATTCCTAATTTAAAG

             
       3677 T
          1 T

       3678 TTATAAGGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.37, C:0.18, G:0.06, T:0.39


Consensus pattern (25 bp):   
TCCTAATAGAATTCCTAATTTAAAG
Done.