Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00977.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1216
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31


Found at i:230 original size:11 final size:11

Alignment explanation


    Indices: 214--239  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        204 TTGCACCCAG

                       
        214 TTGAATACCAT
          1 TTGAATACCAT

                       
        225 TTGAATACCAT
          1 TTGAATACCAT

                
        236 TTGA
          1 TTGA

        240 GCAAGTGTCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38


Consensus pattern (11 bp):   
TTGAATACCAT
Done.