Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g00978.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1517
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28


Found at i:1277 original size:38 final size:38

Alignment explanation


    Indices: 1221--1296  Score: 134
    Period size: 38  Copynumber: 2.0  Consensus size: 38

       1211 TACACATAAT

                *                                 
       1221 GTAATATTGGAGTCATGGGCACAACTATTGCTACGACC
          1 GTAAGATTGGAGTCATGGGCACAACTATTGCTACGACC

                                  *               
       1259 GTAAGATTGGAGTCATGGGCACGACTATTGCTACGACC
          1 GTAAGATTGGAGTCATGGGCACAACTATTGCTACGACC

       1297 TTCGGCACGA


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  38   36  1.00

ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25


Consensus pattern (38 bp):   
GTAAGATTGGAGTCATGGGCACAACTATTGCTACGACC
Done.