Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01005.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2863
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Found at i:1754 original size:46 final size:46

Alignment explanation


    Indices: 1659--1772  Score: 142
    Period size: 46  Copynumber: 2.5  Consensus size: 46

       1649 GACGAGGGCT

                                                   *      
       1659 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
          1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATCAGAGCC

                                     *        *         * * 
       1705 AGTGTAAGACATGTCTGGGACATGCGTCAG-CACGGT-TACATGTGTC
          1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTAT-CA-GAGCC

                      *           
       1751 AGTGTAAGACCTGTCTGGGACA
          1 AGTGTAAGACATGTCTGGGACA

       1773 CGGCATCGAC


Statistics
Matches: 60,  Mismatches: 6, Indels: 4
        0.86            0.09        0.06

Matches are distributed among these distances:
  44    1  0.02
  45    6  0.10
  46   53  0.88

ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23


Consensus pattern (46 bp):   
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATCAGAGCC
Done.