Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01006.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2829
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31


Found at i:1945 original size:13 final size:13

Alignment explanation


    Indices: 1927--1954  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       1917 TGAAAATTCG

                         
       1927 TTAATGGTACATT
          1 TTAATGGTACATT

                         
       1940 TTAATGGTACATT
          1 TTAATGGTACATT

              
       1953 TT
          1 TT

       1955 CCCCTATATT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50


Consensus pattern (13 bp):   
TTAATGGTACATT
Done.