Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01010.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 413

Length: 689
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34


Found at i:41 original size:19 final size:19

Alignment explanation


    Indices: 17--56  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

          7 TTTTTTTTTT

                    *       *  
         17 ATTAGAATCGAAAAGTTTA
          1 ATTAGAATAGAAAAGTATA

                               
         36 ATTAGAATAGAAAAGTATA
          1 ATTAGAATAGAAAAGTATA

              
         55 AT
          1 AT

         57 AAAAGTTTAA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30


Consensus pattern (19 bp):   
ATTAGAATAGAAAAGTATA
Done.