Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01025.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6218
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33


Found at i:1315 original size:29 final size:29

Alignment explanation


    Indices: 1265--1324  Score: 75
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       1255 ACTACTTAAA

                                         
       1265 TTAACTAACCAAAAATAACCTAATAGAAT
          1 TTAACTAACCAAAAATAACCTAATAGAAT

                *     *  *   *      *    
       1294 TTAATTAACCTAAGATATCCTAATTGAAT
          1 TTAACTAACCAAAAATAACCTAATAGAAT

              
       1323 TT
          1 TT

       1325 CCTATTCCTA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33


Consensus pattern (29 bp):   
TTAACTAACCAAAAATAACCTAATAGAAT
Done.