Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01026.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1813
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:217 original size:61 final size:61

Alignment explanation


    Indices: 122--243  Score: 244
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        112 TTCCAATGCA

                                                                         
        122 ACCTAGTTTATTTTCATTACATGTTTCATTCAAATGCGAGCTGCTATTTTGGATCAACGTT
          1 ACCTAGTTTATTTTCATTACATGTTTCATTCAAATGCGAGCTGCTATTTTGGATCAACGTT

                                                                         
        183 ACCTAGTTTATTTTCATTACATGTTTCATTCAAATGCGAGCTGCTATTTTGGATCAACGTT
          1 ACCTAGTTTATTTTCATTACATGTTTCATTCAAATGCGAGCTGCTATTTTGGATCAACGTT

        244 CTCAGTATTT


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   61  1.00

ACGTcount: A:0.25, C:0.18, G:0.15, T:0.43


Consensus pattern (61 bp):   
ACCTAGTTTATTTTCATTACATGTTTCATTCAAATGCGAGCTGCTATTTTGGATCAACGTT
Done.