Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01027.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3291
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:381 original size:16 final size:16

Alignment explanation


    Indices: 360--395  Score: 72
    Period size: 16  Copynumber: 2.2  Consensus size: 16

        350 ATAGCTTCAG

                            
        360 TTAACGATGGGATTAA
          1 TTAACGATGGGATTAA

                            
        376 TTAACGATGGGATTAA
          1 TTAACGATGGGATTAA

                
        392 TTAA
          1 TTAA

        396 AGTTGCATAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   20  1.00

ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33


Consensus pattern (16 bp):   
TTAACGATGGGATTAA

Found at i:3269 original size:18 final size:18

Alignment explanation


    Indices: 3244--3290  Score: 53
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       3234 TTATAATGTC

                               
       3244 TTAT-TTTATTCATA-TTT
          1 TTATATTTATTC-TAGTTT

                     *        
       3261 TTATATTTAATCTAGTTT
          1 TTATATTTATTCTAGTTT

                        
       3279 TTATTATTTATT
          1 TTA-TATTTATT

       3291 T


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  17    6  0.24
  18   12  0.48
  19    7  0.28

ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68


Consensus pattern (18 bp):   
TTATATTTATTCTAGTTT
Done.