Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01035.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 240
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34


Found at i:82 original size:29 final size:29

Alignment explanation


    Indices: 50--113  Score: 85
    Period size: 28  Copynumber: 2.2  Consensus size: 29

         40 AAAATCAAAC

                    *                    
         50 TTAAAAACTTGGGTTTTCAAAACCTATTT
          1 TTAAAAACATGGGTTTTCAAAACCTATTT

                             **    *     
         79 TT-AAAACATGGGTTTTTGAAACTTATTT
          1 TTAAAAACATGGGTTTTCAAAACCTATTT

                   
        107 TTAAAAA
          1 TTAAAAA

        114 TCCACCTTCA


Statistics
Matches: 30,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  28   24  0.80
  29    6  0.20

ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42


Consensus pattern (29 bp):   
TTAAAAACATGGGTTTTCAAAACCTATTT

Done.