Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01039.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7230
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:186 original size:6 final size:6

Alignment explanation


    Indices: 172--215  Score: 70
    Period size: 6  Copynumber: 7.2  Consensus size: 6

        162 TCCTTTACGT

                                                   *           
        172 TTAGAAA TTAGAA TTAGAA TTAGAA TTAGAA TTAAAA TTAGAA T
          1 TTAG-AA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA T

        216 CGTTTCTTTC


Statistics
Matches: 35,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
   6   31  0.89
   7    4  0.11

ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34


Consensus pattern (6 bp):   
TTAGAA

Found at i:6322 original size:22 final size:22

Alignment explanation


    Indices: 6294--6345  Score: 95
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       6284 GACTCAAGTT

                                  
       6294 CCATTTTGCTTGCAAAATGGTG
          1 CCATTTTGCTTGCAAAATGGTG

                              *   
       6316 CCATTTTGCTTGCAAAATTGTG
          1 CCATTTTGCTTGCAAAATGGTG

                    
       6338 CCATTTTG
          1 CCATTTTG

       6346 GAATCTACAT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  22   29  1.00

ACGTcount: A:0.21, C:0.19, G:0.19, T:0.40


Consensus pattern (22 bp):   
CCATTTTGCTTGCAAAATGGTG
Done.