Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01039.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3961
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Found at i:186 original size:6 final size:6

Alignment explanation


    Indices: 172--215  Score: 70
    Period size: 6  Copynumber: 7.2  Consensus size: 6

        162 TCCTTTACGT

                                                   *           
        172 TTAGAAA TTAGAA TTAGAA TTAGAA TTAGAA TTAAAA TTAGAA T
          1 TTAG-AA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA TTAGAA T

        216 CGTTTCTTTC


Statistics
Matches: 35,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
   6   31  0.89
   7    4  0.11

ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34


Consensus pattern (6 bp):   
TTAGAA

Done.