Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01042.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4823
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37


Found at i:3626 original size:31 final size:30

Alignment explanation


    Indices: 3588--3646  Score: 91
    Period size: 31  Copynumber: 1.9  Consensus size: 30

       3578 TCATAGGGTG

                                           
       3588 ATAGCAATATGTATATATTAGCCTCTTTTTT
          1 ATAGCAATATGTATATATTAGCCT-TTTTTT

                          * *           
       3619 ATAGCAATATGTATTTGTTAGCCTTTTT
          1 ATAGCAATATGTATATATTAGCCTTTTT

       3647 GAGCTCTAAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  30    4  0.15
  31   22  0.85

ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49


Consensus pattern (30 bp):   
ATAGCAATATGTATATATTAGCCTTTTTTT
Done.