Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01069.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 515

Length: 859
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27


Found at i:733 original size:135 final size:135

Alignment explanation


    Indices: 588--858  Score: 470
    Period size: 135  Copynumber: 2.0  Consensus size: 135

        578 ACAATTATAA

                                        *       *  *                 *       
        588 TAAAAAAATTTGATAGCCGGTACAACTATTAGAAAGTGTGTAGGCCTTCACAATCATGTCAGTGC
          1 TAAAAAAATTTGATAGCCGGTACAACTAATAGAAAGCGTATAGGCCTTCACAATCATATCAGTGC

                       *                                                     
        653 CACGTATATATGCATGGTTGACTATTTGTATAATATTATGGAAAAATAAAACAGAATGGCCTTTA
         66 CACGTATATATACATGGTTGACTATTTGTATAATATTATGGAAAAATAAAACAGAATGGCCTTTA

                 
        718 CTATT
        131 CTATT

                                                                        *   *
        723 TAAAAAAATTTGATAGCCGGTACAACTAATAGAAAGCGTATAGGCCTTCACAATCATATCGGTGT
          1 TAAAAAAATTTGATAGCCGGTACAACTAATAGAAAGCGTATAGGCCTTCACAATCATATCAGTGC

              *                                                              
        788 CATGTATATATACATGGTTGACTATTTGTATAATATTATGGAAAAATAAAACAGAATGGCCTTTA
         66 CACGTATATATACATGGTTGACTATTTGTATAATATTATGGAAAAATAAAACAGAATGGCCTTTA

                 
        853 CTATT
        131 CTATT

             
        858 T
          1 T

        859 T


Statistics
Matches: 128,  Mismatches: 8, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
 135  128  1.00

ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32


Consensus pattern (135 bp):   
TAAAAAAATTTGATAGCCGGTACAACTAATAGAAAGCGTATAGGCCTTCACAATCATATCAGTGC
CACGTATATATACATGGTTGACTATTTGTATAATATTATGGAAAAATAAAACAGAATGGCCTTTA
CTATT
Done.