Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01050.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2960
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:2869 original size:15 final size:14

Alignment explanation


    Indices: 2847--2894  Score: 51
    Period size: 15  Copynumber: 3.3  Consensus size: 14

       2837 AAAAACTTGC

                          
       2847 TTTTTTGTTTTGTT
          1 TTTTTTGTTTTGTT

                        *  
       2861 TTGTTTTGTTTTTTT
          1 TT-TTTTGTTTTGTT

                   *    *  
       2876 TTTATTTTTTTTATT
          1 TTT-TTTGTTTTGTT

                
       2891 TTTT
          1 TTTT

       2895 ATTCTGGCTT


Statistics
Matches: 29,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  14    4  0.14
  15   25  0.86

ACGTcount: A:0.04, C:0.00, G:0.08, T:0.88


Consensus pattern (14 bp):   
TTTTTTGTTTTGTT

Found at i:2877 original size:10 final size:10

Alignment explanation


    Indices: 2848--2894  Score: 51
    Period size: 10  Copynumber: 4.6  Consensus size: 10

       2838 AAAACTTGCT

                       
       2848 TTTTTGTTTTG
          1 TTTTT-TTTTG

                *     
       2859 TTTTGTTTTG
          1 TTTTTTTTTG

                      
       2869 TTTTTTTTT-
          1 TTTTTTTTTG

                      *
       2878 TATTTTTTTTA
          1 T-TTTTTTTTG

                  
       2889 TTTTTT
          1 TTTTTT

       2895 ATTCTGGCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 5
        0.82            0.05        0.13

Matches are distributed among these distances:
   9    1  0.03
  10   26  0.81
  11    5  0.16

ACGTcount: A:0.04, C:0.00, G:0.09, T:0.87


Consensus pattern (10 bp):   
TTTTTTTTTG

Found at i:2894 original size:16 final size:16

Alignment explanation


    Indices: 2849--2897  Score: 57
    Period size: 16  Copynumber: 3.1  Consensus size: 16

       2839 AAACTTGCTT

                      *    *
       2849 TTTTG-TTTTGTTTTG
          1 TTTTGTTTTTTTTTTA

                            
       2864 TTTTGTTTTTTTTTTA
          1 TTTTGTTTTTTTTTTA

                             
       2880 TTTT-TTTTATTTTTTA
          1 TTTTGTTTT-TTTTTTA

              
       2896 TT
          1 TT

       2898 CTGGCTTTGA


Statistics
Matches: 30,  Mismatches: 2, Indels: 3
        0.86            0.06        0.09

Matches are distributed among these distances:
  15    9  0.30
  16   21  0.70

ACGTcount: A:0.06, C:0.00, G:0.08, T:0.86


Consensus pattern (16 bp):   
TTTTGTTTTTTTTTTA
Done.