Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01081.F9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3242
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36


Found at i:1601 original size:20 final size:20

Alignment explanation


    Indices: 1576--1614  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1566 TGTGAAGTTT

                    *           
       1576 ATTGATGAGCATTTTATATA
          1 ATTGATGAACATTTTATATA

                     *         
       1596 ATTGATGAATATTTTATAT
          1 ATTGATGAACATTTTATAT

       1615 TTGAAATTTA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49


Consensus pattern (20 bp):   
ATTGATGAACATTTTATATA
Done.