Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01094.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8938
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28


Found at i:3116 original size:26 final size:26

Alignment explanation


    Indices: 3082--3139  Score: 91
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       3072 TTCCATACTT

                             *    *   
       3082 AGAGAAAGATTTTAAGTTAAGAGAAG
          1 AGAGAAAGATTTTAAGTCAAGAAAAG

                                      
       3108 AGAGAAAGATTTTAAGTCAAGAAAAG
          1 AGAGAAAGATTTTAAGTCAAGAAAAG

                   
       3134 A-AGAAA
          1 AGAGAAA

       3140 ACTGCCTTTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  25    5  0.17
  26   25  0.83

ACGTcount: A:0.55, C:0.02, G:0.24, T:0.19


Consensus pattern (26 bp):   
AGAGAAAGATTTTAAGTCAAGAAAAG
Done.