Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01099.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2183
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27


Found at i:1330 original size:24 final size:24

Alignment explanation


    Indices: 1288--1336  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1278 ATTCGGATTC

                   *     *          
       1288 GTTACTTGGGGCTGATGAGGATGA
          1 GTTACTTCGGGCTCATGAGGATGA

                          *     *   
       1312 GTTACTTCGGGCTCCTGAGGGTGA
          1 GTTACTTCGGGCTCATGAGGATGA

             
       1336 G
          1 G

       1337 GAATCCGTTG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.16, C:0.14, G:0.41, T:0.29


Consensus pattern (24 bp):   
GTTACTTCGGGCTCATGAGGATGA
Done.