Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01100.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 310

Length: 518
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24


Found at i:134 original size:24 final size:24

Alignment explanation


    Indices: 102--150  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         92 CAACGGATTC

                       *     *      
        102 CTCACCCTCAGGAGCCCGAAGTAA
          1 CTCACCCTCAGCAGCCCCAAGTAA

                *     *             
        126 CTCATCCTCATCAGCCCCAAGTAA
          1 CTCACCCTCAGCAGCCCCAAGTAA

             
        150 C
          1 C

        151 GAATCCGAAT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.29, C:0.41, G:0.14, T:0.16


Consensus pattern (24 bp):   
CTCACCCTCAGCAGCCCCAAGTAA
Done.