Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01132.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2006
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:42 original size:3 final size:3

Alignment explanation


    Indices: 36--77  Score: 84
    Period size: 3  Copynumber: 14.0  Consensus size: 3

         26 TAATAATAAT

                                                                   
         36 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG

         78 GAGTGACATC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   39  1.00

ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00


Consensus pattern (3 bp):   
AAG

Done.