Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01157.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5791
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34


Found at i:957 original size:17 final size:17

Alignment explanation


    Indices: 935--968  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        925 ATAGATTCGC

                     *       
        935 TTAGATATACTTAGTAT
          1 TTAGATATAATTAGTAT

                             
        952 TTAGATATAATTAGTAT
          1 TTAGATATAATTAGTAT

        969 AATATACGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47


Consensus pattern (17 bp):   
TTAGATATAATTAGTAT
Done.