Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01158.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3848
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:1579 original size:18 final size:18

Alignment explanation


    Indices: 1558--1594  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1548 AATTCGACGC

                  *    *      
       1558 AGTGGATAAATTAGATAA
          1 AGTGGAAAAATGAGATAA

                              
       1576 AGTGGAAAAATGAGATAA
          1 AGTGGAAAAATGAGATAA

             
       1594 A
          1 A

       1595 CCAGCTTCAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22


Consensus pattern (18 bp):   
AGTGGAAAAATGAGATAA
Done.