Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01162.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1692
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:490 original size:27 final size:28

Alignment explanation


    Indices: 452--509  Score: 100
    Period size: 27  Copynumber: 2.1  Consensus size: 28

        442 TACGGACATT

                                        
        452 TTTTTTCTTTCTTACACAGCATTAACTA
          1 TTTTTTCTTTCTTACACAGCATTAACTA

                            *           
        480 TTTTTT-TTTCTTACATAGCATTAACTA
          1 TTTTTTCTTTCTTACACAGCATTAACTA

               
        507 TTT
          1 TTT

        510 CTTCCCCATT


Statistics
Matches: 29,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  27   23  0.79
  28    6  0.21

ACGTcount: A:0.24, C:0.17, G:0.03, T:0.55


Consensus pattern (28 bp):   
TTTTTTCTTTCTTACACAGCATTAACTA

Found at i:586 original size:1 final size:1

Alignment explanation


    Indices: 580--604  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

        570 CATTCTCTGC

                                     
        580 AAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAA

        605 CCAGCATCAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.