Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g01061.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1150
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:54 original size:17 final size:17

Alignment explanation


    Indices: 29--61  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

         19 AAAATTTAGC

                             
         29 TACTCTTTTTCTCTCGT
          1 TACTCTTTTTCTCTCGT

                *           
         46 TACTGTTTTTCTCTCG
          1 TACTCTTTTTCTCTCG

         62 ATCCTTCGTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.06, C:0.27, G:0.09, T:0.58


Consensus pattern (17 bp):   
TACTCTTTTTCTCTCGT

Found at i:722 original size:40 final size:40

Alignment explanation


    Indices: 667--748  Score: 164
    Period size: 40  Copynumber: 2.0  Consensus size: 40

        657 AATTGAACCT

                                                    
        667 GATGCTGGGCAAGCTGCTGCACTTGTTCTATGTCACACTA
          1 GATGCTGGGCAAGCTGCTGCACTTGTTCTATGTCACACTA

                                                    
        707 GATGCTGGGCAAGCTGCTGCACTTGTTCTATGTCACACTA
          1 GATGCTGGGCAAGCTGCTGCACTTGTTCTATGTCACACTA

              
        747 GA
          1 GA

        749 GAATTAGCGT


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   42  1.00

ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29


Consensus pattern (40 bp):   
GATGCTGGGCAAGCTGCTGCACTTGTTCTATGTCACACTA
Done.