Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01189.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7335
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:6720 original size:16 final size:17

Alignment explanation


    Indices: 6688--6733  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 17

       6678 CATCCCTTGG

                             
       6688 GGTTAGTTCATTCTCTT
          1 GGTTAGTTCATTCTCTT

                    *        
       6705 GGTTAGTTGA-TCTCTT
          1 GGTTAGTTCATTCTCTT

             *      *    
       6721 GCTTAGTTTATTC
          1 GGTTAGTTCATTC

       6734 CATTTACTGC


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  16   14  0.56
  17   11  0.44

ACGTcount: A:0.13, C:0.15, G:0.20, T:0.52


Consensus pattern (17 bp):   
GGTTAGTTCATTCTCTT
Done.