Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01190.M4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7848
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25


Found at i:3875 original size:17 final size:17

Alignment explanation


    Indices: 3832--3877  Score: 58
    Period size: 16  Copynumber: 2.8  Consensus size: 17

       3822 GCAGTAAATG

                       *     
       3832 GAATAAACTAAGCAAGA
          1 GAATAAACTAACCAAGA

                *            
       3849 G-ATCAACTAACCAAGA
          1 GAATAAACTAACCAAGA

                *        
       3865 GAATGAACTAACC
          1 GAATAAACTAACC

       3878 CCAAGGGATG


Statistics
Matches: 25,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  16   14  0.56
  17   11  0.44

ACGTcount: A:0.52, C:0.20, G:0.15, T:0.13


Consensus pattern (17 bp):   
GAATAAACTAACCAAGA
Done.