Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01196.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9645
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:2833 original size:26 final size:26

Alignment explanation


    Indices: 2797--2849  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2787 GGGACAAAGG

                                      
       2797 CCTCGAATCCTGTCTTTGACGGCGAT
          1 CCTCGAATCCTGTCTTTGACGGCGAT

                                      
       2823 CCTCGAATCCTGTCTTTGACGGCGAT
          1 CCTCGAATCCTGTCTTTGACGGCGAT

             
       2849 C
          1 C

       2850 ATAGCGTGTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.15, C:0.32, G:0.23, T:0.30


Consensus pattern (26 bp):   
CCTCGAATCCTGTCTTTGACGGCGAT
Done.