Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01196.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11570
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28


Found at i:2833 original size:26 final size:26

Alignment explanation


    Indices: 2797--2849  Score: 106
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2787 GGGACAAAGG

                                      
       2797 CCTCGAATCCTGTCTTTGACGGCGAT
          1 CCTCGAATCCTGTCTTTGACGGCGAT

                                      
       2823 CCTCGAATCCTGTCTTTGACGGCGAT
          1 CCTCGAATCCTGTCTTTGACGGCGAT

             
       2849 C
          1 C

       2850 ATAGCGTGTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.15, C:0.32, G:0.23, T:0.30


Consensus pattern (26 bp):   
CCTCGAATCCTGTCTTTGACGGCGAT

Found at i:11384 original size:14 final size:14

Alignment explanation


    Indices: 11365--11395  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

      11355 TTTGAATTAT

                          
      11365 AATGCCACTAATCC
          1 AATGCCACTAATCC

                  *       
      11379 AATGCCGCTAATCC
          1 AATGCCACTAATCC

               
      11393 AAT
          1 AAT

      11396 AGTTTAGATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.35, C:0.32, G:0.10, T:0.23


Consensus pattern (14 bp):   
AATGCCACTAATCC
Done.