Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01206.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3624
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28


Found at i:1629 original size:54 final size:54

Alignment explanation


    Indices: 1571--1692  Score: 185
    Period size: 54  Copynumber: 2.3  Consensus size: 54

       1561 TGGAATGGTC

                                *                                   
       1571 CAAAATGGAGTGAT-CTTGATGCTTCAAATGATGCAAACAA-TTCATGGACTAGTT
          1 CAAAATGGAGTGATGC-TGAGGCTTCAAATGATGCAAACAACTT-ATGGACTAGTT

                                              *               *   
       1625 CAAAATGGAGTGATGCTGAGGCTTCAAATGATGCGAACAACTTATGGACTGGTT
          1 CAAAATGGAGTGATGCTGAGGCTTCAAATGATGCAAACAACTTATGGACTAGTT

                          
       1679 CAAAATGGAGTGAT
          1 CAAAATGGAGTGAT

       1693 ACAGGTGCCT


Statistics
Matches: 63,  Mismatches: 3, Indels: 4
        0.90            0.04        0.06

Matches are distributed among these distances:
  54   60  0.95
  55    3  0.05

ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27


Consensus pattern (54 bp):   
CAAAATGGAGTGATGCTGAGGCTTCAAATGATGCAAACAACTTATGGACTAGTT
Done.