Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01210.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.28


Found at i:35 original size:15 final size:15

Alignment explanation


    Indices: 7--49  Score: 56
    Period size: 13  Copynumber: 3.1  Consensus size: 15

          1 ACGCTC

                           
          7 AAAAA-AAAAAA-AA
          1 AAAAAGAAAAAAGAA

               *           
         20 AAACAG-AAAAAGAA
          1 AAAAAGAAAAAAGAA

                           
         34 AAAAAGAAAAAAGAA
          1 AAAAAGAAAAAAGAA

             
         49 A
          1 A

         50 TCAAAAAACA


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  13    9  0.36
  14    7  0.28
  15    9  0.36

ACGTcount: A:0.88, C:0.02, G:0.09, T:0.00


Consensus pattern (15 bp):   
AAAAAGAAAAAAGAA

Found at i:63 original size:8 final size:8

Alignment explanation


    Indices: 8--49  Score: 50
    Period size: 8  Copynumber: 5.4  Consensus size: 8

          1 ACGCTCA

                   *
          8 AAAAAAAA
          1 AAAAAAAG

                   *
         16 AAAAAAAC
          1 AAAAAAAG

             *      
         24 AGAAAAAG
          1 AAAAAAAG

                    
         32 AAAAAAAG
          1 AAAAAAAG

                    
         40 -AAAAAAG
          1 AAAAAAAG

               
         47 AAA
          1 AAA

         50 TCAAAAAACA


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
   7    7  0.24
   8   22  0.76

ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00


Consensus pattern (8 bp):   
AAAAAAAG
Done.