Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01262.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 526

Length: 877
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:48 original size:33 final size:33

Alignment explanation


    Indices: 6--71  Score: 96
    Period size: 33  Copynumber: 2.0  Consensus size: 33

          1 ATTCT

                                             
          6 CCATAGCAGCAAAAACAAACCCTAAGTAAATCC
          1 CCATAGCAGCAAAAACAAACCCTAAGTAAATCC

                           * * *    *        
         39 CCATAGCAGCAAAAATACATCCTAGGTAAATCC
          1 CCATAGCAGCAAAAACAAACCCTAAGTAAATCC

         72 TCTAGCCGCT


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  33   29  1.00

ACGTcount: A:0.45, C:0.29, G:0.11, T:0.15


Consensus pattern (33 bp):   
CCATAGCAGCAAAAACAAACCCTAAGTAAATCC
Done.