Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01289.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 375

Length: 626
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28


Found at i:484 original size:16 final size:16

Alignment explanation


    Indices: 463--513  Score: 93
    Period size: 16  Copynumber: 3.2  Consensus size: 16

        453 AAGAAAGAGC

                            
        463 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

                            
        479 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               *            
        495 AAACACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               
        511 AAA
          1 AAA

        514 ATACTAGAAA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   34  1.00

ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22


Consensus pattern (16 bp):   
AAATACGCTAGTAAAT
Done.