Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01293.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4012
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31


Found at i:151 original size:23 final size:23

Alignment explanation


    Indices: 125--170  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        115 GGGATATTAG

                                   
        125 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

                                   
        148 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

        171 TCAAAATATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (23 bp):   
ATATTGACTAGTTATATACGAAC
Done.