Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01293.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4492
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32


Found at i:3529 original size:14 final size:15

Alignment explanation


    Indices: 3510--3549  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       3500 GAAGATGGAT

                           
       3510 AAATAAA-AAAAAAG
          1 AAATAAATAAAAAAG

                        *  
       3524 AAATAAATAAAATAG
          1 AAATAAATAAAAAAG

                       
       3539 AATATAAATAA
          1 AA-ATAAATAA

       3550 GATAAAGATA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14    7  0.30
  15    8  0.35
  16    8  0.35

ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17


Consensus pattern (15 bp):   
AAATAAATAAAAAAG

Found at i:4229 original size:11 final size:11

Alignment explanation


    Indices: 4213--4237  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       4203 GCGATTATTG

                       
       4213 TATTTATTGTA
          1 TATTTATTGTA

                       
       4224 TATTTATTGTA
          1 TATTTATTGTA

               
       4235 TAT
          1 TAT

       4238 AAATATAAAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64


Consensus pattern (11 bp):   
TATTTATTGTA
Done.