Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01303.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8219
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:1595 original size:18 final size:18

Alignment explanation


    Indices: 1574--1610  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1564 AATTCGACGC

                  *    *      
       1574 AGTGGATAAATTAGATAA
          1 AGTGGAAAAATGAGATAA

                              
       1592 AGTGGAAAAATGAGATAA
          1 AGTGGAAAAATGAGATAA

             
       1610 A
          1 A

       1611 CCAGCTTCAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22


Consensus pattern (18 bp):   
AGTGGAAAAATGAGATAA

Found at i:4485 original size:17 final size:17

Alignment explanation


    Indices: 4463--4496  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       4453 ATAGATTCGC

                     *       
       4463 TTAGATATACTTAGTAT
          1 TTAGATATAATTAGTAT

                             
       4480 TTAGATATAATTAGTAT
          1 TTAGATATAATTAGTAT

       4497 AATATACGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47


Consensus pattern (17 bp):   
TTAGATATAATTAGTAT
Done.