Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01306.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6797
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30


Found at i:3405 original size:15 final size:15

Alignment explanation


    Indices: 3385--3415  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3375 CTGTATCAGT

                           
       3385 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
       3400 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
       3415 A
          1 A

       3416 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC
Done.