Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01306.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6182
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:2790 original size:15 final size:15

Alignment explanation


    Indices: 2770--2800  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       2760 CTGTATCAGT

                           
       2770 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

                           
       2785 AATGAATCAGAGCAC
          1 AATGAATCAGAGCAC

             
       2800 A
          1 A

       2801 CGGAACCGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13


Consensus pattern (15 bp):   
AATGAATCAGAGCAC
Done.