Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01342.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 512

Length: 854
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29


Found at i:546 original size:25 final size:25

Alignment explanation


    Indices: 498--546  Score: 64
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        488 ACAGTTTTAC

                                     
        498 CCCTAGGAGATAAATTACCGAAATA
          1 CCCTAGGAGATAAATTACCGAAATA

                     *          *    
        523 CCCTAGG-GTTAAATTGACCTAAAT
          1 CCCTAGGAGATAAATT-ACCGAAAT

        547 GCATGTTTGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  24    7  0.33
  25   14  0.67

ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24


Consensus pattern (25 bp):   
CCCTAGGAGATAAATTACCGAAATA
Done.