Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01361.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11222
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28


Found at i:8760 original size:21 final size:21

Alignment explanation


    Indices: 8734--8780  Score: 94
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       8724 GTCCATCGAT

                                 
       8734 TGTTAGTTCTCTTGAAACTTC
          1 TGTTAGTTCTCTTGAAACTTC

                                 
       8755 TGTTAGTTCTCTTGAAACTTC
          1 TGTTAGTTCTCTTGAAACTTC

                 
       8776 TGTTA
          1 TGTTA

       8781 CATCCCTTAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49


Consensus pattern (21 bp):   
TGTTAGTTCTCTTGAAACTTC
Done.