Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01366.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3544
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:2639 original size:15 final size:15

Alignment explanation


    Indices: 2619--2648  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2609 CCAGTATATT

                           
       2619 ATTTTATTTCACTTA
          1 ATTTTATTTCACTTA

                           
       2634 ATTTTATTTCACTTA
          1 ATTTTATTTCACTTA

       2649 GCCTGCCTCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60


Consensus pattern (15 bp):   
ATTTTATTTCACTTA
Done.