Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01373.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 766

Length: 1278
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37


Found at i:122 original size:36 final size:37

Alignment explanation


    Indices: 60--132  Score: 94
    Period size: 36  Copynumber: 2.0  Consensus size: 37

         50 AGCACAATAC

                                                 
         60 GAAGCAACCACCGCGACTGACCGTGA-TCAATAGAAA
          1 GAAGCAACCACCGCGACTGACCGTGATTCAATAGAAA

                         *     ***               
         96 GAAGCAACCACCGTGACTGGTTGTGATTTCAATAGAA
          1 GAAGCAACCACCGCGACTGACCGTGA-TTCAATAGAA

        133 GAAAATCCAT


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  36   22  0.71
  38    9  0.29

ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18


Consensus pattern (37 bp):   
GAAGCAACCACCGCGACTGACCGTGATTCAATAGAAA
Done.