Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01374.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3978
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:3697 original size:16 final size:16

Alignment explanation


    Indices: 3676--3708  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       3666 TAATTTTTTC

                            
       3676 TGTCTCTATTTTATGA
          1 TGTCTCTATTTTATGA

                            
       3692 TGTCTCTATTTTATGA
          1 TGTCTCTATTTTATGA

             
       3708 T
          1 T

       3709 CTATGTTTAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58


Consensus pattern (16 bp):   
TGTCTCTATTTTATGA
Done.