Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01379.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 676

Length: 1127
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:836 original size:15 final size:15

Alignment explanation


    Indices: 816--844  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        806 TACAGCGACC

                           
        816 CCATCCTTATCTCCG
          1 CCATCCTTATCTCCG

                          
        831 CCATCCTTATCTCC
          1 CCATCCTTATCTCC

        845 TCCACCTTCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.14, C:0.48, G:0.03, T:0.34


Consensus pattern (15 bp):   
CCATCCTTATCTCCG
Done.