Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01384.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 385

Length: 642
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26


Found at i:274 original size:12 final size:12

Alignment explanation


    Indices: 257--287  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        247 ACTCGGGGAA

                        
        257 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
        269 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                   
        281 GAGGCCG
          1 GAGGCCG

        288 AGGTAGTACT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.10, C:0.26, G:0.52, T:0.13


Consensus pattern (12 bp):   
GAGGCCGTGGTC
Done.