Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01386.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3680
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36


Found at i:1361 original size:19 final size:19

Alignment explanation


    Indices: 1337--1375  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1327 CTACTAAGAT

                               
       1337 ACTTTTTACTCCCAATATC
          1 ACTTTTTACTCCCAATATC

                    * *        
       1356 ACTTTTTATTTCCAATATC
          1 ACTTTTTACTCCCAATATC

             
       1375 A
          1 A

       1376 TGTTTTTTTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46


Consensus pattern (19 bp):   
ACTTTTTACTCCCAATATC
Done.