Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01408.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5328
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:2501 original size:29 final size:29

Alignment explanation


    Indices: 2459--2516  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2449 TAAATAAATT

                                         
       2459 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

                                         
       2488 CTTTTTTGGAACTACATAGATCTATGGAA
          1 CTTTTTTGGAACTACATAGATCTATGGAA

       2517 TCGGTTAATA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (29 bp):   
CTTTTTTGGAACTACATAGATCTATGGAA

Found at i:3694 original size:14 final size:14

Alignment explanation


    Indices: 3675--3702  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

       3665 TATTTACCTT

                          
       3675 CGATCAATATTATC
          1 CGATCAATATTATC

                          
       3689 CGATCAATATTATC
          1 CGATCAATATTATC

       3703 TTTATCTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36


Consensus pattern (14 bp):   
CGATCAATATTATC

Found at i:4269 original size:23 final size:23

Alignment explanation


    Indices: 4243--4288  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       4233 GGGATATTAG

                                   
       4243 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

                                   
       4266 ATATTGACTAGTTATATACGAAC
          1 ATATTGACTAGTTATATACGAAC

       4289 TCAAAATATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35


Consensus pattern (23 bp):   
ATATTGACTAGTTATATACGAAC
Done.