Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01421.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5044
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29


Found at i:1931 original size:22 final size:23

Alignment explanation


    Indices: 1892--1936  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 23

       1882 AAAGCTCAGG

                        **    *    
       1892 AGAAAGGAGAGACTGAAAGGAAA
          1 AGAAAGGAGAGAAAGAAAAGAAA

                                   
       1915 AGAAA-GAGAGAAAGAAAAGAAA
          1 AGAAAGGAGAGAAAGAAAAGAAA

       1937 TGTGCTGAAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  22   14  0.74
  23    5  0.26

ACGTcount: A:0.64, C:0.02, G:0.31, T:0.02


Consensus pattern (23 bp):   
AGAAAGGAGAGAAAGAAAAGAAA

Found at i:4939 original size:15 final size:15

Alignment explanation


    Indices: 4919--4949  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4909 TGCAAGTTTA

                           
       4919 AAGAAAATTTAATTT
          1 AAGAAAATTTAATTT

                           
       4934 AAGAAAATTTAATTT
          1 AAGAAAATTTAATTT

             
       4949 A
          1 A

       4950 GCCCGGTCCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39


Consensus pattern (15 bp):   
AAGAAAATTTAATTT
Done.