Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01426.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3859
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.34


Found at i:174 original size:32 final size:31

Alignment explanation


    Indices: 138--209  Score: 101
    Period size: 32  Copynumber: 2.3  Consensus size: 31

        128 ATATATATAT

                                            
        138 ATAAATTTAGTGCTGTACTCCTGAGAAAGAAG
          1 ATAAATTTA-TGCTGTACTCCTGAGAAAGAAG

                        *                   
        170 ATAAATTTTATGTTGTACTCCTGAGAAAGAAG
          1 ATAAA-TTTATGCTGTACTCCTGAGAAAGAAG

                     
        202 -TCAAATTT
          1 AT-AAATTT

        210 GTTCGTCACT


Statistics
Matches: 37,  Mismatches: 1, Indels: 5
        0.86            0.02        0.12

Matches are distributed among these distances:
  31    4  0.11
  32   29  0.78
  33    4  0.11

ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33


Consensus pattern (31 bp):   
ATAAATTTATGCTGTACTCCTGAGAAAGAAG

Found at i:1405 original size:17 final size:18

Alignment explanation


    Indices: 1372--1406  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1362 TTGAATTCTA

                              
       1372 TTTGAAAAGAAACATCAT
          1 TTTGAAAAGAAACATCAT

                  *           
       1390 TTTGAATAGAAA-ATCAT
          1 TTTGAAAAGAAACATCAT

       1407 GAAGTTGAGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17    5  0.31
  18   11  0.69

ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31


Consensus pattern (18 bp):   
TTTGAAAAGAAACATCAT
Done.