Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01428.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1677
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35


Found at i:1361 original size:33 final size:33

Alignment explanation


    Indices: 1324--1395  Score: 83
    Period size: 33  Copynumber: 2.2  Consensus size: 33

       1314 GTCAGCACTG

                                    *         
       1324 CTTTGACTTCTCCAGCCACT-GTTTATGCTACTA
          1 CTTTGACTTCTCCAGCCACTAG-TCATGCTACTA

                 *     *   *                 
       1357 CTTTGTCTTCTTCAGTCACTAGTCATGCTACTA
          1 CTTTGACTTCTCCAGCCACTAGTCATGCTACTA

            *     
       1390 ATTTGA
          1 CTTTGA

       1396 GGACACCTAC


Statistics
Matches: 32,  Mismatches: 6, Indels: 2
        0.80            0.15        0.05

Matches are distributed among these distances:
  33   31  0.97
  34    1  0.03

ACGTcount: A:0.19, C:0.26, G:0.12, T:0.42


Consensus pattern (33 bp):   
CTTTGACTTCTCCAGCCACTAGTCATGCTACTA
Done.