Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga14g01434.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 330

Length: 550
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37


Found at i:490 original size:31 final size:33

Alignment explanation


    Indices: 427--500  Score: 100
    Period size: 33  Copynumber: 2.3  Consensus size: 33

        417 AAAATGAAAA

                   *         *               
        427 TAAATTAATAATTTATTTTAATTATACTTAAAT
          1 TAAATTATTAATTTATTCTAATTATACTTAAAT

                                *            
        460 TAAATTATTAATTT-TTCTATTTA-ACTTAAAT
          1 TAAATTATTAATTTATTCTAATTATACTTAAAT

                       
        491 TAAA-TATTAA
          1 TAAATTATTAA

        501 ATAATAATAA


Statistics
Matches: 38,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  30    6  0.16
  31   12  0.32
  32    7  0.18
  33   13  0.34

ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51


Consensus pattern (33 bp):   
TAAATTATTAATTTATTCTAATTATACTTAAAT

Found at i:511 original size:17 final size:17

Alignment explanation


    Indices: 491--546  Score: 64
    Period size: 17  Copynumber: 3.4  Consensus size: 17

        481 TAACTTAAAT

                             
        491 TAAATATTAAATAATAA
          1 TAAATATTAAATAATAA

                             *
        508 TAAAT-TCTAAAT-ATAC
          1 TAAATAT-TAAATAATAA

                             
        524 TAAATA-TAAATAATAA
          1 TAAATATTAAATAATAA

                   
        540 CTAAATA
          1 -TAAATA

        547 ATAA


Statistics
Matches: 33,  Mismatches: 2, Indels: 8
        0.77            0.05        0.19

Matches are distributed among these distances:
  15    5  0.15
  16   12  0.36
  17   16  0.48

ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34


Consensus pattern (17 bp):   
TAAATATTAAATAATAA
Done.